Source code for ontoviz.namespace

import os
from unicodedata import category
from urllib.parse import urljoin, urldefrag
from urllib.request import pathname2url
from rdflib.term import URIRef, Variable, _XSD_PFX, _is_valid_uri


__all__ = [
    'is_ncname',
    'split_uri',
    'Namespace',
    'ClosedNamespace',
    'NamespaceManager',
    'XMLNS',
    'RDF',
    'RDFS',
    'XSD',
    'OWL',
    'SKOS',
    'DOAP',
    'FOAF',
    'DC',
    'DCTERMS',
    'VOID',
]


[docs]class Namespace(str): def __new__(cls, value): try: rt = str.__new__(cls, value) except UnicodeDecodeError: rt = str.__new__(cls, value, 'utf-8') return rt @property
[docs] def title(self): return URIRef(self + 'title')
[docs] def term(self, name): # need to handle slices explicitly because of __getitem__ override return URIRef(self + (name if isinstance(name, str) else ''))
[docs] def __getitem__(self, key, default=None): return self.term(key)
[docs] def __getattr__(self, name): if name.startswith("__"): # ignore any special Python names! raise AttributeError else: return self.term(name)
[docs] def __repr__(self): return "Namespace(%r)" % str.__repr__(self)
class URIPattern(str): __doc__ = """ Utility class for creating URIs according to some pattern This supports either new style formatting with .format or old-style with % operator >>> u=URIPattern("http://example.org/%s/%d/resource") >>> u%('books', 12345) rdflib.term.URIRef(u'http://example.org/books/12345/resource') """ def __new__(cls, value): try: rt = str.__new__(cls, value) except UnicodeDecodeError: rt = str.__new__(cls, value, 'utf-8') return rt def __mod__(self, *args, **kwargs): return URIRef(str(self).__mod__(*args, **kwargs)) def format(self, *args, **kwargs): return URIRef(str.format(self, *args, **kwargs)) def __repr__(self): return "URIPattern(%r)" % str.__repr__(self)
[docs]class ClosedNamespace(object): """ A namespace with a closed list of members Trying to create terms not listen is an error """ def __init__(self, uri, terms): self.uri = uri self.__uris = {} for t in terms: self.__uris[t] = URIRef(self.uri + t)
[docs] def term(self, name): uri = self.__uris.get(name) if uri is None: raise AttributeError("term '{}' not in namespace '{}'".format(name, self.uri)) else: return uri
[docs] def __getitem__(self, key, default=None): return self.term(key)
[docs] def __getattr__(self, name): if name.startswith("__"): # ignore any special Python names! raise AttributeError else: return self.term(name)
[docs] def __str__(self): return str(self.uri)
[docs] def __repr__(self): return "rdf.namespace.ClosedNamespace(%r)" % str(self.uri)
class _RDFNamespace(ClosedNamespace): """ Closed namespace for RDF terms """ def __init__(self): super(_RDFNamespace, self).__init__( URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#"), terms=[ # Syntax Names "RDF", "Description", "ID", "about", "parseType", "resource", "li", "nodeID", "datatype", # RDF Classes "Seq", "Bag", "Alt", "Statement", "Property", "List", "PlainLiteral", # RDF Properties "subject", "predicate", "object", "type", "value", "first", "rest", # and _n where n is a non-negative integer # RDF Resources "nil", # Added in RDF 1.1 "XMLLiteral", "HTML", "langString", ], ) def term(self, name): try: i = int(name) return URIRef("%s_%s" % (self.uri, i)) except ValueError: return super(_RDFNamespace, self).term(name)
[docs]RDF = _RDFNamespace()
[docs]RDFS = ClosedNamespace( uri=URIRef("http://www.w3.org/2000/01/rdf-schema#"), terms=[ "Resource", "Class", "subClassOf", "subPropertyOf", "comment", "label", "domain", "range", "seeAlso", "isDefinedBy", "Literal", "Container", "ContainerMembershipProperty", "member", "Datatype",
], )
[docs]OWL = Namespace('http://www.w3.org/2002/07/owl#')
[docs]XSD = Namespace(_XSD_PFX)
[docs]SKOS = Namespace('http://www.w3.org/2004/02/skos/core#')
[docs]DOAP = Namespace('http://usefulinc.com/ns/doap#')
[docs]FOAF = Namespace('http://xmlns.com/foaf/0.1/')
[docs]DC = Namespace('http://purl.org/dc/elements/1.1/')
[docs]DCTERMS = Namespace('http://purl.org/dc/terms/')
[docs]VOID = Namespace('http://rdfs.org/ns/void#')
[docs]class NamespaceManager(object): """ Class for managing prefix => namespace mappings Sample usage from FuXi ... .. code-block:: python ruleStore = N3RuleStore(additionalBuiltins=additionalBuiltins) nsMgr = NamespaceManager(Graph(ruleStore)) ruleGraph = Graph(ruleStore,namespace_manager=nsMgr) and ... .. code-block:: pycon >>> import rdflib >>> from rdflib import Graph >>> from rdflib.namespace import Namespace, NamespaceManager >>> exNs = Namespace('http://example.com/') >>> namespace_manager = NamespaceManager(Graph()) >>> namespace_manager.bind('ex', exNs, override=False) >>> g = Graph() >>> g.namespace_manager = namespace_manager >>> all_ns = [n for n in g.namespace_manager.namespaces()] >>> assert ('ex', rdflib.term.URIRef('http://example.com/')) in all_ns >>> """ def __init__(self, graph): self.graph = graph self.__cache = {} self.__cache_strict = {} self.__log = None self.__strie = {} self.__trie = {} for p, n in self.namespaces(): # self.bind is not always called insert_trie(self.__trie, str(n)) self.bind("xml", "http://www.w3.org/XML/1998/namespace") self.bind("rdf", RDF) self.bind("rdfs", RDFS) self.bind("xsd", XSD)
[docs] def reset(self): self.__cache = {} self.__strie = {} self.__trie = {} for p, n in self.namespaces(): # repopulate the trie insert_trie(self.__trie, str(n))
[docs] def __get_store(self): return self.graph.store
[docs] store = property(__get_store)
[docs] def qname(self, uri): prefix, namespace, name = self.compute_qname(uri) if prefix == "": return name else: return ":".join((prefix, name))
[docs] def qname_strict(self, uri): prefix, namespace, name = self.compute_qname_strict(uri) if prefix == '': return name else: return ':'.join((prefix, name))
[docs] def normalizeUri(self, rdfTerm): """ Takes an RDF Term and 'normalizes' it into a QName (using the registered prefix) or (unlike compute_qname) the Notation 3 form for URIs: <...URI...> """ try: namespace, name = split_uri(rdfTerm) if namespace not in self.__strie: insert_strie(self.__strie, self.__trie, str(namespace)) namespace = URIRef(str(namespace)) except: if isinstance(rdfTerm, Variable): return "?%s" % rdfTerm else: return "<%s>" % rdfTerm prefix = self.store.prefix(namespace) if prefix is None and isinstance(rdfTerm, Variable): return "?%s" % rdfTerm elif prefix is None: return "<%s>" % rdfTerm else: qNameParts = self.compute_qname(rdfTerm) return ':'.join([qNameParts[0], qNameParts[-1]])
[docs] def compute_qname(self, uri, generate=True): if not _is_valid_uri(uri): raise ValueError( '"{}" does not look like a valid URI, cannot serialize this. Did you want to urlencode it?'.format(uri) ) if uri not in self.__cache: try: namespace, name = split_uri(uri) except ValueError as e: namespace = URIRef(uri) prefix = self.store.prefix(namespace) if not prefix: raise e if namespace not in self.__strie: insert_strie(self.__strie, self.__trie, namespace) if self.__strie[namespace]: pl_namespace = get_longest_namespace(self.__strie[namespace], uri) if pl_namespace is not None: namespace = pl_namespace name = uri[len(namespace) :] namespace = URIRef(namespace) prefix = self.store.prefix(namespace) # warning multiple prefixes problem if prefix is None: if not generate: raise KeyError("No known prefix for {} and generate=False".format(namespace)) num = 1 while 1: prefix = "ns%s" % num if not self.store.namespace(prefix): break num += 1 self.bind(prefix, namespace) self.__cache[uri] = (prefix, namespace, name) return self.__cache[uri]
[docs] def compute_qname_strict(self, uri, generate=True): # code repeated to avoid branching on strict every time # if output needs to be strict (e.g. for xml) then # only the strict output should bear the overhead prefix, namespace, name = self.compute_qname(uri) if is_ncname(str(name)): return prefix, namespace, name else: if uri not in self.__cache_strict: try: namespace, name = split_uri(uri, NAME_START_CATEGORIES) except ValueError as e: message = ( 'This graph cannot be serialized to a strict format ' 'because there is no valid way to shorten {uri}'.format(uri) ) raise ValueError(message) # omitted for strict since NCNames cannot be empty # namespace = URIRef(uri) # prefix = self.store.prefix(namespace) # if not prefix: # raise e if namespace not in self.__strie: insert_strie(self.__strie, self.__trie, namespace) # omitted for strict # if self.__strie[namespace]: # pl_namespace = get_longest_namespace(self.__strie[namespace], uri) # if pl_namespace is not None: # namespace = pl_namespace # name = uri[len(namespace):] namespace = URIRef(namespace) prefix = self.store.prefix(namespace) # warning multiple prefixes problem if prefix is None: if not generate: raise KeyError("No known prefix for {} and generate=False".format(namespace)) num = 1 while 1: prefix = "ns%s" % num if not self.store.namespace(prefix): break num += 1 self.bind(prefix, namespace) self.__cache_strict[uri] = (prefix, namespace, name) return self.__cache_strict[uri]
[docs] def bind(self, prefix, namespace, override=True, replace=False): """bind a given namespace to the prefix if override, rebind, even if the given namespace is already bound to another prefix. if replace, replace any existing prefix with the new namespace """ namespace = URIRef(str(namespace)) # When documenting explain that override only applies in what cases if prefix is None: prefix = '' bound_namespace = self.store.namespace(prefix) # Check if the bound_namespace contains a URI # and if so convert it into a URIRef for comparison # This is to prevent duplicate namespaces with the # same URI if bound_namespace: bound_namespace = URIRef(bound_namespace) if bound_namespace and bound_namespace != namespace: if replace: self.store.bind(prefix, namespace) insert_trie(self.__trie, str(namespace)) return # prefix already in use for different namespace # # append number to end of prefix until we find one # that's not in use. if not prefix: prefix = "default" num = 1 while 1: new_prefix = "%s%s" % (prefix, num) tnamespace = self.store.namespace(new_prefix) if tnamespace and namespace == URIRef(tnamespace): # the prefix is already bound to the correct # namespace return if not self.store.namespace(new_prefix): break num += 1 self.store.bind(new_prefix, namespace) else: bound_prefix = self.store.prefix(namespace) if bound_prefix is None: self.store.bind(prefix, namespace) elif bound_prefix == prefix: pass # already bound else: if override or bound_prefix.startswith("_"): # or a generated prefix self.store.bind(prefix, namespace) insert_trie(self.__trie, str(namespace))
[docs] def namespaces(self): for prefix, namespace in self.store.namespaces(): namespace = URIRef(namespace) yield prefix, namespace
[docs] def absolutize(self, uri, defrag=1): base = urljoin("file:", pathname2url(os.getcwd())) result = urljoin("%s/" % base, uri, allow_fragments=not defrag) if defrag: result = urldefrag(result)[0] if not defrag: if uri and uri[-1] == "#" and result[-1] != "#": result = "%s#" % result return URIRef(result)
# From: http://www.w3.org/TR/REC-xml#NT-CombiningChar # # * Name start characters must have one of the categories Ll, Lu, Lo, # Lt, Nl. # # * Name characters other than Name-start characters must have one of # the categories Mc, Me, Mn, Lm, or Nd. # # * Characters in the compatibility area (i.e. with character code # greater than #xF900 and less than #xFFFE) are not allowed in XML # names. # # * Characters which have a font or compatibility decomposition # (i.e. those with a "compatibility formatting tag" in field 5 of the # database -- marked by field 5 beginning with a "<") are not allowed. # # * The following characters are treated as name-start characters rather # than name characters, because the property file classifies them as # Alphabetic: [#x02BB-#x02C1], #x0559, #x06E5, #x06E6. # # * Characters #x20DD-#x20E0 are excluded (in accordance with Unicode # 2.0, section 5.14). # # * Character #x00B7 is classified as an extender, because the property # list so identifies it. # # * Character #x0387 is added as a name character, because #x00B7 is its # canonical equivalent. # # * Characters ':' and '_' are allowed as name-start characters. # # * Characters '-' and '.' are allowed as name characters. NAME_START_CATEGORIES = ["Ll", "Lu", "Lo", "Lt", "Nl"] SPLIT_START_CATEGORIES = NAME_START_CATEGORIES + ['Nd'] NAME_CATEGORIES = NAME_START_CATEGORIES + ["Mc", "Me", "Mn", "Lm", "Nd"] ALLOWED_NAME_CHARS = ["\u00B7", "\u0387", "-", ".", "_", ":"] # http://www.w3.org/TR/REC-xml-names/#NT-NCName # [4] NCName ::= (Letter | '_') (NCNameChar)* /* An XML Name, minus # the ":" */ # [5] NCNameChar ::= Letter | Digit | '.' | '-' | '_' | CombiningChar # | Extender
[docs]def is_ncname(name): if name: first = name[0] if first == "_" or category(first) in NAME_START_CATEGORIES: for i in range(1, len(name)): c = name[i] if not category(c) in NAME_CATEGORIES: if c != ':' and c in ALLOWED_NAME_CHARS: continue return 0 # if in compatibility area # if decomposition(c)!='': # return 0 return 1 return 0
[docs]XMLNS = "http://www.w3.org/XML/1998/namespace"
[docs]def split_uri(uri, split_start=SPLIT_START_CATEGORIES): if uri.startswith(XMLNS): return (XMLNS, uri.split(XMLNS)[1]) length = len(uri) for i in range(0, length): c = uri[-i - 1] if not category(c) in NAME_CATEGORIES: if c in ALLOWED_NAME_CHARS: continue for j in range(-1 - i, length): if category(uri[j]) in split_start or uri[j] == "_": # _ prevents early split, roundtrip not generate ns = uri[:j] if not ns: break ln = uri[j:] return (ns, ln) break raise ValueError("Can't split '{}'".format(uri))
def insert_trie(trie, value): # aka get_subtrie_or_insert """Insert a value into the trie if it is not already contained in the trie. Return the subtree for the value regardless of whether it is a new value or not.""" if value in trie: return trie[value] multi_check = False for key in tuple(trie.keys()): if len(value) > len(key) and value.startswith(key): return insert_trie(trie[key], value) elif key.startswith(value): # we know the value is not in the trie if not multi_check: trie[value] = {} multi_check = True # there can be multiple longer existing prefixes dict_ = trie.pop(key) # does not break strie since key<->dict_ remains unchanged trie[value][key] = dict_ if value not in trie: trie[value] = {} return trie[value] def insert_strie(strie, trie, value): if value not in strie: strie[value] = insert_trie(trie, value) def get_longest_namespace(trie, value): for key in trie: if value.startswith(key): out = get_longest_namespace(trie[key], value) if out is None: return key else: return out return None